Rapid evolution and host immunity drive the rise and fall of carbapenem resistance during an acute Pseudomonas aeruginosa infection
R Wheatley, J Diaz Caballero, N Kapel, FHR de Winter, P Jangir, A Quinn, E del Barrio-Tofiño, C López-Causapé, J Hedge, G Torrens, T Van der Schalk, BB Xavier, F Fernández-Cuenca, A Arenzana, C Recanatini, L Timbermont, F Sifakis, A Ruzin, O Ali, C Lammens, H Goossens, J Kluytmans, S Kumar-Singh, A Oliver, S Malhotra-Kumar, C MacLean
Nature Communications    12:2460(2021)

Functional cooperativity between the trigger factor chaperone and the ClpXP proteolytic complex
K Rizzolo, AY Hsiung Yu, A Ologbenla, SR Kim, H Zhu, K Ishimori, G Thibault, E Leung, YW Zhang, M Teng, M Haniszewski, N Miah, S Phanse, Z Minic, S Lee, J Diaz Caballero, M Babu, FTF Tsai, T Saio, WA Houry
Nature Communications    12:281(2021)

Microbiome networks and change-point analysis reveal key community changes associated with cystic fibrosis pulmonary exacerbations
M Layeghifard, H Li, PW Wang, SL Donaldson, B. Coburn, ST Clark, J Diaz Caballero, Y Zhang, DE Tullis, YCW Yau, VJ Waters, DM Hwang, DS Guttman
Biofilms and Microbiomes    5:4(2019)

A Genome-Wide Association Analysis Reveals a Role for Recombination in the Evolution of Antimicrobial Resistance in Burkholderia multivorans
J Diaz Caballero, ST Clark, PW Wang, SL Donaldson, B Coburn, DE Tullis, YCW Yau, VJ Waters, DM Hwang, DS Guttman
PLOS Pathogens    14:e1007453(2018)

Structural and biochemical approaches uncover multiple evolutionary trajectories of plant quinate dehydrogenases
A Gritsunov, J Peek, J Diaz Caballero, D Guttman, D Christendat
The Plant Journal    95:812-822 (2018)

Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae
R de AB Assis, LC Polloni, JSL Patané, S Thakur, ÉB Felestrino, J Diaz Caballero, LA Digiampietri, LR Goulart, NF Almeida, R Nascimento, AM Dandekar, PA Zaini, JC Setubal, DS Guttman, LM Moreira
Scientific reports    7:16133 (2017)

Selective sweeps and parallel pathoadaptation drive Pseudomonas aeruginosa evolution in the cystic fibrosis lung
J Diaz Caballero, ST Clark, B Coburn, Y Zhang, PW Wang, SL Donaldson, DE Tullis, YCW Yau, VJ Waters, DM Hwang, DS Guttman
MBio    6:e00981-15 (2015)

Phenotypic diversity within a Pseudomonas aeruginosa population infecting an adult with cystic fibrosis
ST Clark, J Diaz Caballero, M Cheang, B Coburn, PW Wang, SL Donaldson, Y Zhang, M Liu, S Keshavjee, YCW Yau, VJ Waters, DE Tullis, DS Guttman, DM Hwang
Scientific reports    5:10932 (2015)

Lung microbiota across age and disease stage in cystic fibrosis
B Coburn, PW Wang, J Diaz Caballerob>, ST Clark, V Brahma, S Donaldson, Y Zhang, A Surendra, Y Gong, DE Tullis, YCW Yau, VJ Waters, DM Hwang, DS Guttman
Scientific reports    5:10241 (2015)

Analysis of the cystic fibrosis lung microbiota via serial Illumina sequencing of bacterial 16S rRNA hypervariable regions
H Maughan, PW Wang, J Diaz Caballero, P Fung, Y Gong, SL Donaldson, L Yuan, S Keshavjee, Y Zhang, YCW Yau, VJ Waters, DE Tullis, DM Hwang, DS Guttman
PLoS one    7:e45791 (2012)